Pumpkin is in high demand at this time of the year. I recently went to my local Trader Joe's and bought 24 cans of pumpkin, so there is officially no way I run out this season. Chocolate Chip Pumpkin Muffins all season long. These muffins are an absolute crowd pleaser to even the pickiest palates, just sweet enough to satisfy any sweet tooth and the perfect grab-and-go breakfast or after-school snack. They also freeze beautifully for last-minute houseguests. If you're stockpiling pumpkin like I am, my Pumpkin Chocolate Chip Scones are right there in the rotation. For the bigger occasion, my Triple Layer Pumpkin Chocolate Chip Cake takes the same flavor pocket and turns it into a showstopper. And if you want every fall pumpkin recipe in one place, don't miss my 11 Mouth-Watering Pumpkin Recipes for Fall roundup.

Chocolate Chip Pumpkin Muffins at a Glance
- 🕒 Total Time: 45 minutes (5 min prep + 40 min bake)
- 👪 Servings: 24 muffins (perfect for a school bake sale or a freezer stash)
- 🍝 Cuisine Type: American / Fall Baking
- 🧂 Flavor Profile: Warmly spiced with allspice and clove, sweet and tender pumpkin crumb, and pockets of melty semi-sweet chocolate
- 📖 Dietary Info: Vegetarian; contains gluten and eggs (no dairy in the batter)
- 📦 Storage Notes: Airtight at room temp for 3 days; refrigerate for up to a week. Freeze whole on a sheet, then bag and pull as needed; thaw at room temp for an hour or microwave for 20 seconds for that fresh-baked feel
- ⭐Why You'll Love It: A one-bowl muffin that comes together in 5 minutes of prep, bakes for 40, and feeds a small army. Soft, spiced, and loaded with chocolate chips. Make a double batch and you've got school lunches, after-school snacks, and impromptu houseguest breakfasts handled for the next two weeks.
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These pumpkin muffins are an absolute crowd pleaser to even the pickiest palates. They are just sweet enough to satisfy any sweet tooth but are also the perfect grab and go breakfast idea or snack. They are also perfect for keeping in the freezer and quickly warming up in case of any last minute guests. And if you're into these fall flavors, check out the Chocolate Chip Pumpkin Cookies!

Substitutions & Swaps
🎃 Pumpkin & Squash
- Roasted butternut squash purée - Slightly sweeter than canned pumpkin, even smoother crumb; roast until very soft, then blend
- Sweet potato purée - Roast and mash; sweeter and more caramel-forward than pumpkin, especially good with the spice blend here
- Kabocha squash purée - My favorite swap; richer and chestnut-y, gives the muffins a deeper color and flavor
- Unsweetened applesauce (50% swap) - Replace half the pumpkin with applesauce for a lighter, more moist crumb without losing the fall spice profile
🍫 Chocolate & Mix-Ins
- Dark chocolate chips (60-70% cacao) - Less sweet and more cocoa-forward; balances the natural sweetness of the pumpkin
- Chopped chocolate bar - Use a quality 70% bar chopped into uneven shards; you get melty pools and crisp shards in the same muffin
- White chocolate chips - Surprisingly good with pumpkin and clove; sweeter overall, leans dessert-y
- Toasted pecans or walnuts (1 cup) - Sub for half the chocolate or fold in alongside; adds crunch and a savory backbone
- Cinnamon chips - Niche, hard to find, but if you spot them: incredible swap for half the chocolate, doubles down on the fall spice
🌰 Spice Blend
- Pumpkin pie spice - 2 teaspoons replaces both the clove and allspice; convenience swap, slightly sweeter profile
- Cinnamon-forward (2 teaspoon cinnamon, ½ teaspoon ginger) - Skip the clove and allspice for a brighter, more cinnamon-roll energy
- Cardamom (½ tsp) - Add to the existing spice blend; my pick for a more grown-up muffin with a little floral edge
- Espresso powder (1 tsp) - Doesn't make it taste like coffee; deepens the chocolate flavor without adding a new note
🍞 Flour & Sugar
- White whole wheat flour (50% swap) - Replaces half the AP for a nuttier, slightly heartier muffin without making them dense
- 1:1 gluten-free flour blend - Use one with xanthan gum included; expect a slightly more crumbly texture but the flavor holds up perfectly
- Light brown sugar (50% swap) - Replace half the white sugar with brown for a deeper, more caramel-y muffin
- Coconut sugar - 1:1 swap for white sugar, slightly less sweet, gives the muffins a darker, richer color
🎃🍫🧁 Tips & Tricks for the Best Chocolate Chip Pumpkin Muffins
Soft, spiced, chocolate-loaded muffins that feed a small army and freeze like a dream
- Use canned pumpkin purée, not pumpkin pie filling. Pie filling has added sugar and spices that throw the whole recipe off. The label should say "100% pumpkin" and nothing else.
- Don't overmix the batter. Stir just until you stop seeing dry flour. Overworked batter develops gluten, which makes the muffins tough instead of tender.
- Reserve a handful of chocolate chips for the tops. Press a few extra chips on top of each muffin right before baking. They stay visible after the rise and look bakery-worthy.
- Toss the chocolate chips in flour first. Coat the chips in 1 tablespoon of flour from the dry ingredients before folding in. The flour coating prevents them from sinking to the bottom of the muffin.
- Fill liners ¾ full, not to the rim. Pumpkin batter rises a lot. Liners filled too high give you flat-topped, spilled-over muffins instead of the puffy domes you want.
- Start hot, then drop the temp. Bake at 400°F for the first 5 minutes to set the rise, then drop to 350°F for the rest. The high initial heat is what gives you that bakery-style domed top.
- Use a cookie scoop for even portions. A #20 disher (about 3 tablespoons) gives 24 identical muffins. Eyeballed batter means uneven bake times and one tray of underdone muffins next to overdone ones.
- Bloom the spices in the oil first (optional, worth it). Warm the oil with the spices in the microwave for 30 seconds before mixing. Wakes up the volatile oils in the clove and allspice and gives the muffins a deeper flavor.
- Eggs and pumpkin at room temp. Cold eggs and cold pumpkin straight from the fridge make a lumpy batter. Pull both 30 minutes before mixing for a smooth, evenly textured muffin.
- Cool 5 minutes in the pan, then transfer. Leaving them in too long steams the bottoms soggy. Pull at 5 minutes, finish cooling on a wire rack so air gets underneath.
- Freeze whole on a sheet pan, then bag. Don't bag warm muffins, they'll stick to each other. Freeze flat first, then transfer to a zip-top; pull individual muffins as needed.

Chocolate Chip Pumpkin Muffins
Ingredients
- 3 cups all purpose flour
- 3 cups white sugar
- 2 teaspoons baking soda
- ½ teaspoon baking powder
- 1 teaspoon kosher salt
- 2 cups canned pumpkin
- 1 cup vegetable oil (or coconut oil)
- 4 eggs
- ⅔ cup water
- 1 teaspoon ground clove
- 1 teaspoon allspice
- 2 cups semi-sweet chocolate chips
Instructions
- Preheat oven to 350 degrees
- In a large bowl combine the flour, sugar, baking soda, baking powder and salt. Set aside.
- In a mixer combine the pumpkin, oil, eggs, water and spices on medium speed. Slowly add the dry ingredients and mix on low until everything is just combined. Lastly, add the chocolate chips and fold in with a spatula.
- Transfer batter into 2 prepared muffin tins, about ⅔ of the way full, and sprinkle with a few extra chocolate chips on top. Bake for about 25-30 minutes, until a knife is inserted in the middle and comes out clean. Transfer to cooling rack and let cool. (NOTE - baking time will vary depending on what style muffin tin you are using - so best bet is to check the muffins with a knife and once the knife comes out clean, they are done)
Notes
- Use canned pumpkin purée, not pumpkin pie filling. Pie filling has added sugar and spices that throw the whole recipe off. The label should say "100% pumpkin" and nothing else.
- Don't overmix the batter. Stir just until you stop seeing dry flour. Overworked batter develops gluten, which makes the muffins tough instead of tender.
- Reserve a handful of chocolate chips for the tops. Press a few extra chips on top of each muffin right before baking. They stay visible after the rise and look bakery-worthy.
- Toss the chocolate chips in flour first. Coat the chips in 1 tablespoon of flour from the dry ingredients before folding in. The flour coating prevents them from sinking to the bottom of the muffin.
- Fill liners ¾ full, not to the rim. Pumpkin batter rises a lot. Liners filled too high give you flat-topped, spilled-over muffins instead of the puffy domes you want.
- Start hot, then drop the temp. Bake at 400°F for the first 5 minutes to set the rise, then drop to 350°F for the rest. The high initial heat is what gives you that bakery-style domed top.
- Use a cookie scoop for even portions. A #20 disher (about 3 tablespoons) gives 24 identical muffins. Eyeballed batter means uneven bake times and one tray of underdone muffins next to overdone ones.
- Bloom the spices in the oil first (optional, worth it). Warm the oil with the spices in the microwave for 30 seconds before mixing. Wakes up the volatile oils in the clove and allspice and gives the muffins a deeper flavor.
- Eggs and pumpkin at room temp. Cold eggs and cold pumpkin straight from the fridge make a lumpy batter. Pull both 30 minutes before mixing for a smooth, evenly textured muffin.
- Cool 5 minutes in the pan, then transfer. Leaving them in too long steams the bottoms soggy. Pull at 5 minutes, finish cooling on a wire rack so air gets underneath.
- Freeze whole on a sheet pan, then bag. Don't bag warm muffins, they'll stick to each other. Freeze flat first, then transfer to a zip-top; pull individual muffins as needed.
Looks great—To confirm, 3 cups sugar? Seems like a lot? Anyone substitute part of the white with brown sugar? TIA!
Confirming the sugar is correct - it makes a LOT of muffins!
I replaced 1 cup sugar with light brown sugar & muffins turned out great. Oil, however, was a lot! My muffins were a greasy mess. For 2nd batch (I only have one 12-muffin tin) I turned oven temp to 425 for first 5 minutes then decreased to 350 without opening oven & that made the muffins perfect. Next time might sub half oil for apple sauce. A bit too sweet for me, but my daughter devoured them.
Could you substitute coconut sugar for the white?
haven't tested it with coconut sugar!
Next day, the muffins are so sticky! I let them completely cool before putting them into a tupperware. Is there something I can do to prevent this?
pumpkin is generally sticky! I freeze them and that helps
Gaby! These are delicious! I'm eating one for dessert tonight, already looking forward to eating one for breakfast tomorrow, and saving some for guests this weekend. Win - win - win!
These are delicious!! There was a little extra batter so I was able to make 2 dozen muffins AND a loaf of pumpkin bread. Will make these every Fall!
The muffins are delicious!!
Would these turn out using one for one gluten free flour? I’m assuming this is pumpkin purée, is that correct?
yes it's pumpkin puree and I have not tested with GF flour so I dont know if it's a 1:1 ratio substitution
Muffins turned out perfect but a little too dark....any thing I can change?
did you use a dark baking pan? that could contribute. or try baking in the middle of the oven so they aren't so close to the top
What’s the best way to freeze these?
bake, cool, transfer to an air tight container and freeze
Hi Gaby,
I gave fresh pumpkin that I wanted to bake with. Could I use that in place of the canned pumpkin? The same amount? If not please suggest some sweet pumpkin recipes that use fresh pumpkin. Thankyou!
you would need to roast it and then puree it and then you could use it 1:1
How long can these stay out in room temp or should we stick it in the fridge after a couple of days?
I would put in the fridge to make them last longer! or freeze
These are soooo good. I took Gaby’s advice and bought 10 cans of pumpkin at Thanksgiving so I would have it all year. Eating pumpkin muffins in July during Covid warms my heart.
omg girl after my own heart!
The best! Just the right amount of sweet and spice. And chocolate, of course. I love that this recipe makes a ton of muffins. They freeze well, too!
Love these!!! Went way too fast in my house, I halved the recipe and now I have to make another double batch because they are all gone.
I just made these and they are delicious 🙂 The combination of pumpkin and chocolate chip is perfect! I took them out closer to the 30 minute mark. I’ll definitely make them again, thank you!